Well, I always liked using the MC function to make the alien work as scout. I never use the alien puppet to kill other aliens, since the point is.. why improve something you'd kill afterwards?

I like grouping the puppets in one corner, and blow 'em up to smithereens in the next turn using the blaster.. the scream of pain is so loud LOL
And i don't think that bravery factor can be increased. The same thing applies with psionic strength, which can't improve.
Also, i never knew that holding something else in the other hand while one hand is holding a gun will affect the accuracy.. that's new.. i guess there's no telling that we know EVERYTHING about this game huh?