No. That's if you are raiding the base for supplies then leaving. If you want to blow up a base without killing the aliens, send blaster bombs into the command center. One in each end of the upstairs part should take out all of those tables and hence "destroy" the base. You would then get your men back to the green rooms and abort. Killing the aliens is generally best since you would get everything and not just what you could carry out.
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