Games with a manual still on the list:
Al-Qadim - The Genies Curse
Badblood - But you have the manual
Celtic Tales - Balor of the Evil Eye
Darklands
Eye of the Beholder 1 & 2
The Elder Scrolls - Arena
Ultima 6 & 7
Wasteland
I have in PDF:
Amberstar (map and rune table)
Dungeon Master 1 & 2
Eye of the Beholder 3
Ishar 1, 2 & 3
Ultima 7 - The second part and expansion
Wizardry VII - Crusaders of the Dark Savant
Printed, to be scanned when I have time:
Albion
They can be found at
http://www.replacementdocs.com or
http://www.gamemanuals.net/index.
I hope this helps as manuals, to me, are an important piece.